Installation on linux

Prerequisites

Before getting started, ensure you have Miniconda installed on your machine (i.e., using your terminal conda should be available). If your (older) conda version doesn’t support the parameter ‘–platform’, try the platform independent installation.

# Clone the repository
git clone https://github.com/DMH-biodatasci/SegMantX.git
cd SegMantX

# Create and activate a new conda environment from the provided .yml file
conda env create -f SegMantX.yml --platform linux-64
# Alternatively: conda env create -f SegMantX.yml --platform linux-aarch64
conda activate SegMantX

#Ensure running the post_install.sh script to make SegMantX globally callable
./post_install.sh

Note, we also provide a solution using SegMantX and its app via Docker. However, it is less recommended as the syntax for running SegMantX changes and it may be less user-friendly.